Detailed information of SNP:
|
SNP ID:
sf0515054424(Gbrowse)
Chromosome: chr05 Position: 15054424 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 54.23% | 45.77% |
| All Indica | 798 | 32.96% | 67.04% |
| All Japonica | 497 | 85.71% | 14.29% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 375 | 17.87% | 82.13% |
| Indica II | 213 | 57.28% | 42.72% |
| Indica Intermediate | 210 | 35.24% | 64.76% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 43.62% | 56.38% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0515054424 | C->T | INTERGENIC | None |