Detailed information of SNP:
|
SNP ID:
sf0515116539(Gbrowse)
Chromosome: chr05 Position: 15116539 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1334 | 64.54% | 35.46% |
| All Indica | 787 | 89.07% | 10.93% |
| All Japonica | 426 | 16.20% | 83.80% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 93.58% | 6.42% |
| Indica II | 203 | 79.31% | 20.69% |
| Indica Intermediate | 210 | 90.48% | 9.52% |
| Temperate Japonica | 284 | 3.17% | 96.83% |
| Tropical Japonica | 81 | 61.73% | 38.27% |
| Japonica Intermediate | 61 | 16.39% | 83.61% |
| Group VI/Aromatic | 13 | 15.38% | 84.62% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0515116539 | A->G | INTERGENIC | None |