Detailed information of SNP:
|
SNP ID:
sf0515119792(Gbrowse)
Chromosome: chr05 Position: 15119792 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1408 | 52.77% | 47.23% |
| All Indica | 788 | 79.70% | 20.30% |
| All Japonica | 497 | 13.08% | 86.92% |
| Aus | 67 | 41.79% | 58.21% |
| Indica I | 366 | 83.61% | 16.39% |
| Indica II | 211 | 69.67% | 30.33% |
| Indica Intermediate | 211 | 82.94% | 17.06% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 50.00% | 50.00% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0515119792 | C->T | LOC_Os05g26100(LOC_Os05g26100.1) | INTRON |