Detailed information of SNP:
|
SNP ID:
sf0515142937(Gbrowse)
Chromosome: chr05 Position: 15142937 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1397 | 86.26% | 13.74% |
| All Indica | 784 | 79.72% | 20.28% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 61 | 62.30% | 37.70% |
| Indica I | 368 | 81.79% | 18.21% |
| Indica II | 207 | 81.64% | 18.36% |
| Indica Intermediate | 209 | 74.16% | 25.84% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0515142937 | C->T | INTERGENIC | None |