Detailed information of SNP:
|
SNP ID:
sf0515142973(Gbrowse)
Chromosome: chr05 Position: 15142973 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1398 | 84.55% | 15.45% |
| All Indica | 786 | 77.23% | 22.77% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 59 | 57.63% | 42.37% |
| Indica I | 369 | 78.32% | 21.68% |
| Indica II | 207 | 80.68% | 19.32% |
| Indica Intermediate | 210 | 71.90% | 28.10% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0515142973 | T->G | INTERGENIC | None |