Detailed information of SNP:



SNP ID: sf0515142973(Gbrowse)

Chromosome: chr05

Position: 15142973
Major allele: T

Minor allele: G

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of G(minor allele)
All1398 84.55% 15.45%
All Indica786 77.23% 22.77%
All Japonica497 98.79% 1.21%
Aus59 57.63% 42.37%
Indica I369 78.32% 21.68%
Indica II207 80.68% 19.32%
Indica Intermediate210 71.90% 28.10%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 94.68% 5.32%
Japonica Intermediate68 98.53% 1.47%
Group VI/Aromatic14 92.86% 7.14%
Intermediate42 88.10% 11.90%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0515142973 T->G INTERGENIC None