Detailed information of SNP:
|
SNP ID:
sf0515143193(Gbrowse)
Chromosome: chr05 Position: 15143193 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1401 | 86.08% | 13.92% |
| All Indica | 786 | 79.39% | 20.61% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 62 | 64.52% | 35.48% |
| Indica I | 369 | 80.22% | 19.78% |
| Indica II | 208 | 81.73% | 18.27% |
| Indica Intermediate | 209 | 75.60% | 24.40% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0515143193 | T->A | INTERGENIC | None |