Detailed information of SNP:
|
SNP ID:
sf0515199710(Gbrowse)
Chromosome: chr05 Position: 15199710 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1373 | 93.52% | 6.48% |
| All Indica | 758 | 88.65% | 11.35% |
| All Japonica | 493 | 100.00% | 0.00% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 352 | 86.08% | 13.92% |
| Indica II | 204 | 91.18% | 8.82% |
| Indica Intermediate | 202 | 90.59% | 9.41% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 91 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0515199710 | T->C | LOC_Os05g26220(LOC_Os05g26220.1) | INTRON |