Detailed information of SNP:
|
SNP ID:
sf0515200370(Gbrowse)
Chromosome: chr05 Position: 15200370 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1314 | 80.97% | 19.03% |
| All Indica | 705 | 69.36% | 30.64% |
| All Japonica | 489 | 95.50% | 4.50% |
| Aus | 65 | 90.77% | 9.23% |
| Indica I | 323 | 65.94% | 34.06% |
| Indica II | 199 | 77.39% | 22.61% |
| Indica Intermediate | 183 | 66.67% | 33.33% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 89 | 82.02% | 17.98% |
| Japonica Intermediate | 65 | 93.85% | 6.15% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0515200370 | C->T | LOC_Os05g26220(LOC_Os05g26220.1) | INTRON |