Detailed information of SNP:
|
SNP ID:
sf0515216353(Gbrowse)
Chromosome: chr05 Position: 15216353 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1273 | 70.78% | 29.22% |
| All Indica | 689 | 54.43% | 45.57% |
| All Japonica | 482 | 91.49% | 8.51% |
| Aus | 51 | 86.27% | 13.73% |
| Indica I | 321 | 39.25% | 60.75% |
| Indica II | 196 | 78.06% | 21.94% |
| Indica Intermediate | 172 | 55.81% | 44.19% |
| Temperate Japonica | 332 | 98.80% | 1.20% |
| Tropical Japonica | 84 | 65.48% | 34.52% |
| Japonica Intermediate | 66 | 87.88% | 12.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 72.97% | 27.03% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0515216353 | C->T | LOC_Os05g26250(LOC_Os05g26250.1) | INTRON |