Detailed information of SNP:
|
SNP ID:
sf0515221064(Gbrowse)
Chromosome: chr05 Position: 15221064 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1284 | 97.35% | 2.65% |
| All Indica | 780 | 97.05% | 2.95% |
| All Japonica | 385 | 97.40% | 2.60% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 366 | 95.63% | 4.37% |
| Indica II | 206 | 98.54% | 1.46% |
| Indica Intermediate | 208 | 98.08% | 1.92% |
| Temperate Japonica | 239 | 97.07% | 2.93% |
| Tropical Japonica | 85 | 98.82% | 1.18% |
| Japonica Intermediate | 61 | 96.72% | 3.28% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0515221064 | C->T | LOC_Os05g26260(LOC_Os05g26260.1) | Non-Synonymous SNP |