Detailed information of SNP:
|
SNP ID:
sf0515231257(Gbrowse)
Chromosome: chr05 Position: 15231257 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 96.90% | 3.10% |
| All Indica | 799 | 97.50% | 2.50% |
| All Japonica | 497 | 95.77% | 4.23% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 94.33% | 5.67% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0515231257 | T->C | INTERGENIC | None |