Detailed information of SNP:
|
SNP ID:
sf0515234310(Gbrowse)
Chromosome: chr05 Position: 15234310 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 70.60% | 29.40% |
| All Indica | 793 | 95.96% | 4.04% |
| All Japonica | 490 | 27.96% | 72.04% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 374 | 96.26% | 3.74% |
| Indica II | 210 | 94.76% | 5.24% |
| Indica Intermediate | 209 | 96.65% | 3.35% |
| Temperate Japonica | 332 | 8.43% | 91.57% |
| Tropical Japonica | 93 | 81.72% | 18.28% |
| Japonica Intermediate | 65 | 50.77% | 49.23% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0515234310 | T->C | LOC_Os05g26290(LOC_Os05g26290.1) | Non-Synonymous SNP |