Detailed information of SNP:
|
SNP ID:
sf0515255531(Gbrowse)
Chromosome: chr05 Position: 15255531 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 61.28% | 38.72% |
| All Indica | 799 | 88.49% | 11.51% |
| All Japonica | 497 | 14.69% | 85.31% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 94.40% | 5.60% |
| Indica II | 213 | 74.65% | 25.35% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 335 | 2.99% | 97.01% |
| Tropical Japonica | 94 | 56.38% | 43.62% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0515255531 | A->G | LOC_Os05g26320(LOC_Os05g26320.1) | Non-Synonymous SNP |