Detailed information of SNP:
|
SNP ID:
sf0515260653(Gbrowse)
Chromosome: chr05 Position: 15260653 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 61.67% | 38.33% |
| All Indica | 795 | 44.15% | 55.85% |
| All Japonica | 496 | 86.09% | 13.91% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 372 | 29.84% | 70.16% |
| Indica II | 213 | 61.50% | 38.50% |
| Indica Intermediate | 210 | 51.90% | 48.10% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 93 | 48.39% | 51.61% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0515260653 | G->A | LOC_Os05g26330(LOC_Os05g26330.1) | Synonymous |