Detailed information of SNP:
|
SNP ID:
sf0515305573(Gbrowse)
Chromosome: chr05 Position: 15305573 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1399 | 96.14% | 3.86% |
| All Indica | 783 | 94.51% | 5.49% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 64 | 84.38% | 15.62% |
| Indica I | 364 | 97.80% | 2.20% |
| Indica II | 210 | 92.86% | 7.14% |
| Indica Intermediate | 209 | 90.43% | 9.57% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0515305573 | G->C | LOC_Os05g26420(LOC_Os05g26420.1) | INTRON |