Detailed information of SNP:
|
SNP ID:
sf0515307385(Gbrowse)
Chromosome: chr05 Position: 15307385 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1393 | 97.20% | 2.80% |
| All Indica | 777 | 95.37% | 4.63% |
| All Japonica | 494 | 99.60% | 0.40% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 363 | 96.97% | 3.03% |
| Indica II | 208 | 94.23% | 5.77% |
| Indica Intermediate | 206 | 93.69% | 6.31% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 91 | 97.80% | 2.20% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0515307385 | T->C | INTERGENIC | None |