Detailed information of SNP:
|
SNP ID:
sf0515309681(Gbrowse)
Chromosome: chr05 Position: 15309681 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1383 | 93.93% | 6.07% |
| All Indica | 778 | 92.03% | 7.97% |
| All Japonica | 485 | 96.29% | 3.71% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 364 | 89.56% | 10.44% |
| Indica II | 208 | 95.19% | 4.81% |
| Indica Intermediate | 206 | 93.20% | 6.80% |
| Temperate Japonica | 332 | 99.10% | 0.90% |
| Tropical Japonica | 86 | 84.88% | 15.12% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0515309681 | G->A | LOC_Os05g26430(LOC_Os05g26430.1) | INTRON |