Detailed information of SNP:
|
SNP ID:
sf0515311876(Gbrowse)
Chromosome: chr05 Position: 15311876 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 97.37% | 2.63% |
| All Indica | 798 | 98.87% | 1.13% |
| All Japonica | 493 | 97.97% | 2.03% |
| Aus | 61 | 73.77% | 26.23% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 96.19% | 3.81% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 90 | 88.89% | 11.11% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0515311876 | C->T | LOC_Os05g26430(LOC_Os05g26430.1) | INTRON |