Detailed information of SNP:
|
SNP ID:
sf0515372156(Gbrowse)
Chromosome: chr05 Position: 15372156 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1380 | 85.87% | 14.13% |
| All Indica | 762 | 77.30% | 22.70% |
| All Japonica | 496 | 95.77% | 4.23% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 348 | 64.94% | 35.06% |
| Indica II | 210 | 91.43% | 8.57% |
| Indica Intermediate | 204 | 83.82% | 16.18% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 81.72% | 18.28% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0515372156 | C->T | LOC_Os05g26560(LOC_Os05g26560.1) | Non-Synonymous SNP |