Detailed information of SNP:
|
SNP ID:
sf0515381146(Gbrowse)
Chromosome: chr05 Position: 15381146 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1394 | 97.13% | 2.87% |
| All Indica | 776 | 95.49% | 4.51% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 65 | 95.38% | 4.62% |
| Indica I | 365 | 96.44% | 3.56% |
| Indica II | 208 | 93.75% | 6.25% |
| Indica Intermediate | 203 | 95.57% | 4.43% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0515381146 | A->G | LOC_Os05g26570(LOC_Os05g26570.1) | Non-Synonymous SNP |