Detailed information of SNP:
|
SNP ID:
sf0515448743(Gbrowse)
Chromosome: chr05 Position: 15448743 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1356 | 95.35% | 4.65% |
| All Indica | 737 | 91.72% | 8.28% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 340 | 84.12% | 15.88% |
| Indica II | 201 | 99.00% | 1.00% |
| Indica Intermediate | 196 | 97.45% | 2.55% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0515448743 | C->T | INTERGENIC | None |