Detailed information of SNP:
|
SNP ID:
sf0515462389(Gbrowse)
Chromosome: chr05 Position: 15462389 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 53.34% | 46.66% |
| All Indica | 789 | 76.93% | 23.07% |
| All Japonica | 497 | 12.68% | 87.32% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 368 | 81.25% | 18.75% |
| Indica II | 212 | 63.21% | 36.79% |
| Indica Intermediate | 209 | 83.25% | 16.75% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 51.06% | 48.94% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0515462389 | A->G | LOC_Os05g26740(LOC_Os05g26740.1) | INTRON |