Detailed information of SNP:
|
SNP ID:
sf0515467229(Gbrowse)
Chromosome: chr05 Position: 15467229 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1211 | 80.51% | 19.49% |
| All Indica | 627 | 68.42% | 31.58% |
| All Japonica | 471 | 93.84% | 6.16% |
| Aus | 61 | 96.72% | 3.28% |
| Indica I | 256 | 57.81% | 42.19% |
| Indica II | 188 | 80.85% | 19.15% |
| Indica Intermediate | 183 | 70.49% | 29.51% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 76 | 69.74% | 30.26% |
| Japonica Intermediate | 61 | 95.08% | 4.92% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 81.58% | 18.42% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0515467229 | C->T | LOC_Os05g26750(LOC_Os05g26750.1) | Synonymous |