Detailed information of SNP:
|
SNP ID:
sf0515506270(Gbrowse)
Chromosome: chr05 Position: 15506270 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1379 | 63.23% | 36.77% |
| All Indica | 791 | 89.38% | 10.62% |
| All Japonica | 469 | 15.35% | 84.65% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 94.39% | 5.61% |
| Indica II | 206 | 78.16% | 21.84% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 323 | 2.17% | 97.83% |
| Tropical Japonica | 88 | 61.36% | 38.64% |
| Japonica Intermediate | 58 | 18.97% | 81.03% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 38 | 65.79% | 34.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0515506270 | T->C | INTERGENIC | None |