Detailed information of SNP:
|
SNP ID:
sf0515523330(Gbrowse)
Chromosome: chr05 Position: 15523330 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1363 | 93.54% | 6.46% |
| All Indica | 754 | 88.59% | 11.41% |
| All Japonica | 494 | 99.80% | 0.20% |
| Aus | 64 | 100.00% | 0.00% |
| Indica I | 348 | 82.76% | 17.24% |
| Indica II | 207 | 97.10% | 2.90% |
| Indica Intermediate | 199 | 89.95% | 10.05% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 97.30% | 2.70% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0515523330 | G->A | INTERGENIC | None |