Detailed information of SNP:
|
SNP ID:
sf0515583619(Gbrowse)
Chromosome: chr05 Position: 15583619 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1296 | 92.13% | 7.87% |
| All Indica | 686 | 86.30% | 13.70% |
| All Japonica | 490 | 98.98% | 1.02% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 306 | 80.72% | 19.28% |
| Indica II | 204 | 93.63% | 6.37% |
| Indica Intermediate | 176 | 87.50% | 12.50% |
| Temperate Japonica | 333 | 99.70% | 0.30% |
| Tropical Japonica | 90 | 96.67% | 3.33% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0515583619 | C->G | INTERGENIC | None |