Detailed information of SNP:
|
SNP ID:
sf0515611686(Gbrowse)
Chromosome: chr05 Position: 15611686 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1364 | 59.97% | 40.03% |
| All Indica | 752 | 40.16% | 59.84% |
| All Japonica | 494 | 89.07% | 10.93% |
| Aus | 65 | 61.54% | 38.46% |
| Indica I | 349 | 37.82% | 62.18% |
| Indica II | 204 | 48.53% | 51.47% |
| Indica Intermediate | 199 | 35.68% | 64.32% |
| Temperate Japonica | 333 | 98.80% | 1.20% |
| Tropical Japonica | 94 | 54.26% | 45.74% |
| Japonica Intermediate | 67 | 89.55% | 10.45% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 56.41% | 43.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0515611686 | C->G | LOC_Os05g26970(LOC_Os05g26970.1) | INTRON |