Detailed information of SNP:
|
SNP ID:
sf0515615368(Gbrowse)
Chromosome: chr05 Position: 15615368 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1309 | 94.58% | 5.42% |
| All Indica | 769 | 97.40% | 2.60% |
| All Japonica | 429 | 90.68% | 9.32% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 371 | 99.46% | 0.54% |
| Indica II | 194 | 91.24% | 8.76% |
| Indica Intermediate | 204 | 99.51% | 0.49% |
| Temperate Japonica | 302 | 93.05% | 6.95% |
| Tropical Japonica | 76 | 86.84% | 13.16% |
| Japonica Intermediate | 51 | 82.35% | 17.65% |
| Group VI/Aromatic | 10 | 40.00% | 60.00% |
| Intermediate | 35 | 91.43% | 8.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0515615368 | G->A | INTERGENIC | None |