Detailed information of SNP:
|
SNP ID:
sf0515675278(Gbrowse)
Chromosome: chr05 Position: 15675278 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1302 | 70.28% | 29.72% |
| All Indica | 737 | 92.27% | 7.73% |
| All Japonica | 459 | 32.24% | 67.76% |
| Aus | 51 | 86.27% | 13.73% |
| Indica I | 343 | 92.71% | 7.29% |
| Indica II | 209 | 91.39% | 8.61% |
| Indica Intermediate | 185 | 92.43% | 7.57% |
| Temperate Japonica | 317 | 12.62% | 87.38% |
| Tropical Japonica | 89 | 87.64% | 12.36% |
| Japonica Intermediate | 53 | 56.60% | 43.40% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0515675278 | C->T | LOC_Os05g27060(LOC_Os05g27060.1) | Synonymous |