Detailed information of SNP:
|
SNP ID:
sf0515791535(Gbrowse)
Chromosome: chr05 Position: 15791535 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1371 | 68.78% | 31.22% |
| All Indica | 758 | 85.49% | 14.51% |
| All Japonica | 491 | 37.47% | 62.53% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 359 | 83.01% | 16.99% |
| Indica II | 205 | 89.76% | 10.24% |
| Indica Intermediate | 194 | 85.57% | 14.43% |
| Temperate Japonica | 334 | 16.47% | 83.53% |
| Tropical Japonica | 91 | 91.21% | 8.79% |
| Japonica Intermediate | 66 | 69.70% | 30.30% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0515791535 | A->C | INTERGENIC | None |