Detailed information of SNP:
|
SNP ID:
sf0515791536(Gbrowse)
Chromosome: chr05 Position: 15791536 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1394 | 93.69% | 6.31% |
| All Indica | 775 | 89.16% | 10.84% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 364 | 86.26% | 13.74% |
| Indica II | 209 | 94.26% | 5.74% |
| Indica Intermediate | 202 | 89.11% | 10.89% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0515791536 | C->A | INTERGENIC | None |