Detailed information of SNP:
|
SNP ID:
sf0515811643(Gbrowse)
Chromosome: chr05 Position: 15811643 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 75.33% | 24.67% |
| All Indica | 799 | 98.50% | 1.50% |
| All Japonica | 497 | 41.45% | 58.55% |
| Aus | 67 | 44.78% | 55.22% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 20.60% | 79.40% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0515811643 | T->G | LOC_Os05g27304(LOC_Os05g27304.1) | INTRON |