Detailed information of SNP:
|
SNP ID:
sf0515812800(Gbrowse)
Chromosome: chr05 Position: 15812800 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 76.12% | 23.88% |
| All Indica | 797 | 98.12% | 1.88% |
| All Japonica | 493 | 44.02% | 55.98% |
| Aus | 67 | 44.78% | 55.22% |
| Indica I | 374 | 97.86% | 2.14% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 210 | 98.57% | 1.43% |
| Temperate Japonica | 331 | 22.96% | 77.04% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0515812800 | G->A | LOC_Os05g27304(LOC_Os05g27304.1) | INTRON |