Detailed information of SNP:
|
SNP ID:
sf0515862576(Gbrowse)
Chromosome: chr05 Position: 15862576 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 62.16% | 37.84% |
| All Indica | 799 | 89.74% | 10.26% |
| All Japonica | 497 | 15.69% | 84.31% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 213 | 77.00% | 23.00% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 60.64% | 39.36% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0515862576 | A->G | LOC_Os05g27380(LOC_Os05g27380.1) | INTRON |