Detailed information of SNP:
|
SNP ID:
sf0515864171(Gbrowse)
Chromosome: chr05 Position: 15864171 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1398 | 96.42% | 3.58% |
| All Indica | 781 | 94.24% | 5.76% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 363 | 93.39% | 6.61% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 205 | 92.68% | 7.32% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0515864171 | G->A | LOC_Os05g27390(LOC_Os05g27390.1) | Non-Synonymous SNP |