Detailed information of SNP:
|
SNP ID:
sf0515864358(Gbrowse)
Chromosome: chr05 Position: 15864358 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1370 | 62.41% | 37.59% |
| All Indica | 752 | 43.75% | 56.25% |
| All Japonica | 497 | 85.92% | 14.08% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 344 | 21.80% | 78.20% |
| Indica II | 204 | 70.10% | 29.90% |
| Indica Intermediate | 204 | 54.41% | 45.59% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 43.62% | 56.38% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0515864358 | C->T | LOC_Os05g27390(LOC_Os05g27390.1) | INTRON |