Detailed information of SNP:
|
SNP ID:
sf0515867448(Gbrowse)
Chromosome: chr05 Position: 15867448 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1358 | 50.44% | 49.56% |
| All Indica | 743 | 28.94% | 71.06% |
| All Japonica | 495 | 86.46% | 13.54% |
| Aus | 65 | 12.31% | 87.69% |
| Indica I | 347 | 28.53% | 71.47% |
| Indica II | 205 | 33.66% | 66.34% |
| Indica Intermediate | 191 | 24.61% | 75.39% |
| Temperate Japonica | 334 | 98.50% | 1.50% |
| Tropical Japonica | 93 | 45.16% | 54.84% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0515867448 | G->T | LOC_Os05g27400(LOC_Os05g27400.1) | INTRON |