Detailed information of SNP:
|
SNP ID:
sf0515869116(Gbrowse)
Chromosome: chr05 Position: 15869116 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 97.38% | 2.62% |
| All Indica | 793 | 97.10% | 2.90% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 65 | 84.62% | 15.38% |
| Indica I | 374 | 97.59% | 2.41% |
| Indica II | 212 | 97.64% | 2.36% |
| Indica Intermediate | 207 | 95.65% | 4.35% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0515869116 | G->A | LOC_Os05g27400(LOC_Os05g27400.1) | SNPs that introduce stop codons |