Detailed information of SNP:
|
SNP ID:
sf0515885618(Gbrowse)
Chromosome: chr05 Position: 15885618 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 60.41% | 39.59% |
| All Indica | 798 | 42.36% | 57.64% |
| All Japonica | 497 | 84.71% | 15.29% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 375 | 24.00% | 76.00% |
| Indica II | 213 | 67.14% | 32.86% |
| Indica Intermediate | 210 | 50.00% | 50.00% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 40.43% | 59.57% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0515885618 | G->C | LOC_Os05g27430(LOC_Os05g27430.1) | Non-Synonymous SNP |