Detailed information of SNP:
|
SNP ID:
sf0515947721(Gbrowse)
Chromosome: chr05 Position: 15947721 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 51.55% | 48.45% |
| All Indica | 799 | 76.47% | 23.53% |
| All Japonica | 497 | 15.49% | 84.51% |
| Aus | 67 | 40.30% | 59.70% |
| Indica I | 375 | 86.67% | 13.33% |
| Indica II | 213 | 52.58% | 47.42% |
| Indica Intermediate | 211 | 82.46% | 17.54% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 60.64% | 39.36% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 39.02% | 60.98% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0515947721 | G->A | INTERGENIC | None |