Detailed information of SNP:
|
SNP ID:
sf0515970031(Gbrowse)
Chromosome: chr05 Position: 15970031 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 96.43% | 3.57% |
| All Indica | 782 | 93.99% | 6.01% |
| All Japonica | 495 | 99.39% | 0.61% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 363 | 92.01% | 7.99% |
| Indica II | 210 | 95.24% | 4.76% |
| Indica Intermediate | 209 | 96.17% | 3.83% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0515970031 | G->A | LOC_Os05g27540(LOC_Os05g27540.1) | INTRON |