Detailed information of SNP:
|
SNP ID:
sf0515974645(Gbrowse)
Chromosome: chr05 Position: 15974645 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1358 | 60.38% | 39.62% |
| All Indica | 740 | 87.97% | 12.03% |
| All Japonica | 497 | 15.49% | 84.51% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 358 | 93.02% | 6.98% |
| Indica II | 186 | 75.81% | 24.19% |
| Indica Intermediate | 196 | 90.31% | 9.69% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 58.51% | 41.49% |
| Japonica Intermediate | 68 | 20.59% | 79.41% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0515974645 | A->G | LOC_Os05g27560(LOC_Os05g27560.1) | Synonymous |