Detailed information of SNP:
|
SNP ID:
sf0516022409(Gbrowse)
Chromosome: chr05 Position: 16022409 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 50.64% | 49.36% |
| All Indica | 798 | 29.95% | 70.05% |
| All Japonica | 497 | 83.90% | 16.10% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 374 | 26.20% | 73.80% |
| Indica II | 213 | 33.33% | 66.67% |
| Indica Intermediate | 211 | 33.18% | 66.82% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 38.30% | 61.70% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 40 | 47.50% | 52.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0516022409 | G->A | INTERGENIC | None |