Detailed information of SNP:
|
SNP ID:
sf0516048540(Gbrowse)
Chromosome: chr05 Position: 16048540 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 69.43% | 30.57% |
| All Indica | 799 | 98.75% | 1.25% |
| All Japonica | 491 | 16.29% | 83.71% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 332 | 2.41% | 97.59% |
| Tropical Japonica | 92 | 63.04% | 36.96% |
| Japonica Intermediate | 67 | 20.90% | 79.10% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0516048540 | T->C | INTERGENIC | None |