Detailed information of SNP:
|
SNP ID:
sf0516066490(Gbrowse)
Chromosome: chr05 Position: 16066490 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1313 | 85.07% | 14.93% |
| All Indica | 706 | 79.75% | 20.25% |
| All Japonica | 492 | 94.11% | 5.89% |
| Aus | 61 | 72.13% | 27.87% |
| Indica I | 320 | 79.38% | 20.63% |
| Indica II | 196 | 76.53% | 23.47% |
| Indica Intermediate | 190 | 83.68% | 16.32% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 91 | 74.73% | 25.27% |
| Japonica Intermediate | 67 | 94.03% | 5.97% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0516066490 | C->T | INTERGENIC | None |