Detailed information of SNP:
|
SNP ID:
sf0516071553(Gbrowse)
Chromosome: chr05 Position: 16071553 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1398 | 88.41% | 11.59% |
| All Indica | 779 | 79.85% | 20.15% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 364 | 76.37% | 23.63% |
| Indica II | 208 | 99.04% | 0.96% |
| Indica Intermediate | 207 | 66.67% | 33.33% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0516071553 | G->A | LOC_Os05g27690(LOC_Os05g27690.1) | INTRON |