Detailed information of SNP:
|
SNP ID:
sf0516072566(Gbrowse)
Chromosome: chr05 Position: 16072566 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1398 | 70.67% | 29.33% |
| All Indica | 783 | 55.81% | 44.19% |
| All Japonica | 495 | 96.57% | 3.43% |
| Aus | 65 | 60.00% | 40.00% |
| Indica I | 365 | 55.62% | 44.38% |
| Indica II | 210 | 70.95% | 29.05% |
| Indica Intermediate | 208 | 40.87% | 59.13% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 83.87% | 16.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0516072566 | C->T | LOC_Os05g27690(LOC_Os05g27690.1) | Non-Synonymous SNP |