Detailed information of SNP:
|
SNP ID:
sf0516074055(Gbrowse)
Chromosome: chr05 Position: 16074055 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1383 | 58.50% | 41.50% |
| All Indica | 773 | 75.55% | 24.45% |
| All Japonica | 494 | 28.34% | 71.66% |
| Aus | 63 | 84.13% | 15.87% |
| Indica I | 363 | 73.00% | 27.00% |
| Indica II | 205 | 72.68% | 27.32% |
| Indica Intermediate | 205 | 82.93% | 17.07% |
| Temperate Japonica | 335 | 14.63% | 85.37% |
| Tropical Japonica | 91 | 58.24% | 41.76% |
| Japonica Intermediate | 68 | 55.88% | 44.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 48.72% | 51.28% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0516074055 | A->T | LOC_Os05g27690(LOC_Os05g27690.1) | INTRON |