Detailed information of SNP:
|
SNP ID:
sf0516075047(Gbrowse)
Chromosome: chr05 Position: 16075047 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1321 | 93.49% | 6.51% |
| All Indica | 718 | 89.14% | 10.86% |
| All Japonica | 495 | 100.00% | 0.00% |
| Aus | 55 | 87.27% | 12.73% |
| Indica I | 337 | 86.94% | 13.06% |
| Indica II | 191 | 94.24% | 5.76% |
| Indica Intermediate | 190 | 87.89% | 12.11% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0516075047 | C->T | INTERGENIC | None |