Detailed information of SNP:
|
SNP ID:
sf0516105374(Gbrowse)
Chromosome: chr05 Position: 16105374 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1347 | 90.65% | 9.35% |
| All Indica | 742 | 87.33% | 12.67% |
| All Japonica | 484 | 95.04% | 4.96% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 338 | 86.98% | 13.02% |
| Indica II | 202 | 88.12% | 11.88% |
| Indica Intermediate | 202 | 87.13% | 12.87% |
| Temperate Japonica | 328 | 97.87% | 2.13% |
| Tropical Japonica | 90 | 86.67% | 13.33% |
| Japonica Intermediate | 66 | 92.42% | 7.58% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0516105374 | G->C | INTERGENIC | None |